Laboratory Investigation into Biodegradation of Jute Drains with Implications for Field Behavior
Publication: Journal of Geotechnical and Geoenvironmental Engineering
Volume 144, Issue 6
Abstract
Naturally occurring materials such as jute and coir have some favorable engineering characteristics and also degrade over time, so they have increasingly been used in engineering applications in recent years. The efficient way that naturally prefabricated vertical drains made from those materials help accelerate soil consolidation has been shown in previous studies, but they also tend to decompose rapidly in adverse environments, where cellulose-degrading bacteria cause a serious deterioration of their favorable drainage properties. This study presents a laboratory investigation into the biodegradation of prefabricated vertical jute drains in saturated soft soils, where the tensile strength of jute and coir fibers and the discharge capacity of drains decrease in response to different environments. Micro-observation also shows a transformation of the jute fibers and destruction of the drain structure due to biodegradation. DNA extraction and sequencing techniques to determine the microbial properties of these decayed fibers indicate that bacteria such as species of the genera Clostridium and Bacillus can cause rapid decomposition of cellulose-based material (i.e., jute), whereas other organic matter–consuming microbes such as sulfate-reducing bacteria do not directly contribute to the biodegradation of jute. In response, an analytical approach that incorporates various forms of drain discharge capacity over time is proposed to predict soil consolidation. The results indicate there is considerable deviation in dissipating the excess pore pressure when the drain degrades in different ways.
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Acknowledgments
The authors acknowledge the National Jute Board of India and the Australia Research Council for funding this research. The genomic analyses were carried out in the Australian Genome Research Faculty (AGRF). Microscopic observation on the samples was carried out in the Australian Institute of Innovative Materials (AIIM), University of Wollongong. The first author’s Ph.D. scholarship was sponsored by the Australia Endeavour Scheme.
References
Asha, B. S., and Mandal, J. N. (2012). “Absorption and discharge capacity tests on natural prefabricated vertical drains.” Geosynthetics Int., 19(4), 263–271.
Asha, B. S., and Mandal, J. N. (2015). “Laboratory performance tests on natural prefabricated vertical drains in marine clay.” Proc. Inst. Civ. Eng. Ground Improv., 168(1), 45–65.
ASTM. (2008). “Standard test method for constant head hydraulic transmissivity (in-plane flow) of geotextiles and geotextile related products.” ASTM D4716, West Conshohocken, PA.
Banerjee, P. K. (2012). “Environmental textiles from jute and coir.” Handbook of natural fibers: Processing and applications, R. M. Kozlowski, ed., Woodhead Publishing, Cambridge, U.K., 401–427.
Barba, M., Czosnek, H., and Hadidi, A. (2014). “Historical perspective, development and applications of next-generation sequencing in plant virology.” Viruses, 6(1), 106–136.
Barron, R. A. (1948). “The influence of drain wells on the consolidation of fine-grained soils.” Trans. ASCE, 113(2348), 718–754.
Barton, L. L., and Hamilton, W. A. (2007). Sulphate-reducing bacteria: Environmental and engineered systems, Cambridge University Press, New York.
Berg, J., et al. (2012). “Selection for Cu-tolerant bacterial communities with altered composition, but unaltered richness, via long-term Cu exposure.” Appl. Environ. Microbiol., 78(20), 7438–7446.
Brown, M. E., and Chang, M. C. Y. (2014). “Exploring bacterial lignin degradation.” Curr. Opin. Chem. Biol., 19, 1–7.
Bugg, T. D. H., Ahmad, M., Hardiman, E. M., and Rahmanpour, R. (2011). “Pathways for degradation of lignin in bacteria and fungi.” Nat. Prod. Rep., 28(12), 1883–1896.
Chu, J., Bo, M. W., and Choa, V. (2004). “Practical considerations for using vertical drains in soil improvement projects.” Geotext. Geomembr., 22(1–2), 101–117.
Cookson, J. T. (1995). Bioremediation engineering: Design and application, McGraw-Hill, New York.
Dashtban, M., Schraft, H., Syed, T. A., and Qin, W. (2010). “Fungal biodegradation and enzymatic modification of lignin.” Int. J. Biochem. Mol. Biol., 1(1), 36–50.
Defoirdt, N., et al. (2010). “Assessment of the tensile properties of coir, bamboo and jute fiber.” Compos. Part A, 41(5), 588–595.
DeSantis, T. Z., et al. (2006). “Greengenes, a chimera-checked 16 S rRNA gene database and workbench compatible with ARB.” Appl. Environ. Microbiol., 72(7), 5069–5072.
Fernandes, N. A., Isikhuemhen, O. S., and Ohimain, E. I. (2011). “Lignin degradation, ligninolytic enzymes activities and exopolysaccharide production by Grifola frondosa strains cultivated on oak sawdust.” Braz. J. Microbiol., 42(3), 1101–1108.
Fierer, N., Bradford, M. A., and Jackson, R. B. (2007). “Toward an ecological classification of soil bacteria.” Ecology, 88(6), 1354–1364.
Goodfellow, M., et al. (2009). “Bergey’s manual of systematic bacteriology.” The firmicutes, 2nd Ed., Vol. 3, Springer, New York.
Gregory, M. R., and Andrady, A. L. (2003). “Plastic in the marine environment.” Plastics and environment, A. L. Andrady, ed., Wiley, East Orange, NJ, 379–401.
Gupta, K. M. (2011). “Starch based composites for packing applications.” Handbook of bioplastics and biocomposites engineering applications, S. Pilla, ed., Wiley, Marblehead, MA.
Hansbo, S. (1981). “Consolidation of fine-grained soils by prefabricated drains and lime column installation.” Proc., 10th Int. Conf. on Soil Mechanics and Foundation Engineering, Vol. 3, A.A. Balkema, Rotterdam, Netherlands, 677–682.
Indraratna, B., Nguyen, T. T., Carter, J., and Rujikiatkamjorn, C. (2016). “Influence of biodegradable natural fiber drains on the radial consolidation of soft soil.” Comput. Geotech., 78, 171–180.
Indraratna, B., and Redana, I. W. (1998). “Development of the smear zone around vertical band drains.” Ground Improv., 2(4), 165–178.
Indraratna, B., Sathananthan, I., Bamunawita, C., and Balasubramaniam, A. S. (2005). “Theoretical and numerical perspectives and field observations for the design and performance evaluation of embankments constructed on soft marine clay.” Ground improvement case histories, B. Indraratna and J. Chu, eds., Elsevier, New York.
Inglett, P. W., Reddy, K. R., and Corstanje, R. (2005). “Anaerobic soils.” Encyclopedia of soils in the environment, D. Hillel, ed., Elsevier, Oxford, U.K., 72–78.
Jang, Y. S., Kim, Y. W., and Park, J. Y. (2001). “Consolidation efficiency of natural and plastic geosynthetic band drains.” Geosynthetics Int., 8(4), 283–301.
Jayabal, S., Sathiyamurthy, S., Loganathan, K. T., and Kalyanasundaram, S. (2012). “Effect of soaking time and concentration of NaOH solution on mechanical properties of coir-polyester composites.” Bull. Mater. Sci., 35(4), 567–574.
Kato, S., Chino, K., Kamimura, N., Masai, E., Yumoto, I., and Kamagata, Y. (2015). “Methanogenic degradation of lignin-derived monoaromatic compounds by microbial enrichments from rice paddy field soil.” Sci. Rep., 5(1), 14295.
Kim, J. H., and Cho, N. (2008). “Pilot scale field test for natural fiber drain.” Proc., 4th Asian Regional Conf. on Geosynthetics, G. Li, Y. Chen, and X. Tang, eds., Springer, Berlin, 409–414.
Kirby, R. (2005). “Actinomycetes and lignin degradation.” Adv. Appl. Microbiol., 58, 125–168.
Kirk, J. L., et al. (2004). “Methods of studying soil microbial diversity.” J. Microbiol. Methods, 58(2), 169–188.
Lauber, C. L., Hamady, M., Knight, R., and Fierer, N. (2009). “Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale.” Appl. Environ. Microbiol., 75(15), 5111–5120.
Lee, S. L., Karunaratne, G. P., and Aziz, M. A. (2003). “Design and performance of Fiberdrain in soil improvement projects.” Ground Improv., 7(4), 149–156.
Lee, S. L., Karunaratne, G. P., Ramaswamy, S. D., Aziz, M. A., and Das Gupta, N. C. (1994). “Natural geosynthetic drain for soil improvement.” Geotext. Geomembr., 13(6–7), 457–474.
Lee, S. L., Ramaswamy, S. D., Aziz, M. A., Das Gupta, N. C., and Karunaratne, G. P. (1987). “Fiberdrain for consolidation of soft soils.” Proc., Post-Vienna Conf. on Geotextiles, Vol. 2, Singapore, 238–258.
Leschine, S. B. (1995). “Cellulose degradation in anaerobic environments.” Annu. Rev. Microbiol., 49(1), 399–426.
Liu, B.-R., Jia, G.-M., Chen, J., and Wang, G. (2006). “A review of methods for studying microbial diversity in soils.” Pedosphere, 16(1), 18–24.
Mahmoudi, N., Slater, G. F., and Fulthorpe, R. R. (2011). “Comparison of commercial DNA extraction kits for isolation and purification of bacterial and eukaryotic DNA from PAH-contaminated soil.” Can. J. Microbiol., 57(8), 623–628.
Maron, P.-A., Mougel, C., and Ranjard, L. (2011). “Soil microbial diversity: Methodological strategy, spatial overview and functional interest.” C.R. Biol., 334(5–6), 403–411.
Miura, T., Tou, M., Murota, H., and Bono, M. (1995). “The basic experiment on permeability characteristics of fiber drain.” Proc., Annual Regional Meeting of JSCE, Kyushu, Japan (in Japanese).
MO BIO Laboratories, Inc. (2016). “Instruction manual of Powerlyzer-PowerSoil DNA isolation kit.” ⟨https://mobio.com/products/dna-isolation/soil/powersoil-dna-isolation-kit.html⟩ (Jul. 29, 2016).
Muyzer, G., and Stams, A. J. (2008). “The ecology and biotechnology of sulphate-reducing bacteria.” Nat. Rev. Microbiol., 6, 441–454.
Nguyen, T. T., and Indraratna, B. (2016). “Hydraulic behaviour of parallel fibers under longitudinal flow: A numerical treatment.” Can. Geotech. J., 53(7), 1081–1092.
Nguyen, T. T., and Indraratna, B. (2017a). “Experimental and numerical investigations into hydraulic behaviour of coir fiber drain.” Can. Geotech. J., 54(1), 75–87.
Nguyen, T. T., and Indraratna, B. (2017b). “The permeability of natural fiber drains, capturing their micro-features.” Proc., Institution of Civil Engineers—Ground Improvement, 170(3), 123–136.
Patel, G. B., Khan, A. W., Agnew, B. J., and Colvin, J. R. (1980). “Isolation and characterization of an anaerobic, cellulolytic microorganism, Acetivibrio cellulolyticus gen. nov., sp. nov.” Int. J. Syst. Evol. Microbiol., 30, 179–185.
Pineda, J. A., Suwal, L. P., Kelly, R. B., Bates, L., and Sloan, S. W. (2016). “Characterisation of Ballina clay.” Geotechnique, 66(7), 556–577.
Rahman, M. S. (2010). “Jute—A versatile natural fiber. Cultivation, extraction and processing.” Industrial applications of natural fibers: Structure, properties and technical applications, J. Mussig, ed., Wiley, Chichester, U.K., 135–161.
Rousk, J., et al. (2010). “Soil bacterial and fungal communities across a pH gradient in an arable soil.” ISME J., 4(10), 1340–1351.
Rubin, B. E. R., Gibbons, S. M., Kennedy, S., Hampton-Marcell, J., Owens, S., and Gilbert, J. A. (2013). “Investigating the impact of storage conditions on microbial community composition in soil samples.” PLoS One, 8(7), e70460.
Rujikiatkamjorn, C., and Indraratna, B. (2007). “Analytical solutions and design curves for vacuum-assisted consolidation with both vertical and horizontal drainage.” Can. Geotech. J., 44(2), 188–200.
Saha, P., Roy, D., Manna, S., Adhikari, B., Sen, R., and Roy, S. (2012). “Durability of transesterified jute geotextiles.” Geotext. Geomembr., 35, 69–75.
Singh, J., Birbian, N., Sinha, S., and Goswami, A. (2014). “A critical review on PCR, its types and applications.” Int. J. Adv. Res. Biol. Sci., 1(7), 65–80.
Som, N., Chattopadhyay, B. C., and Sanyal, T. (2009). A manual on use of jute geotextiles in civil engineering, 4th Ed., Jute Manufacturers Development Council, Kolkata, India.
Spectrum Technologies International. (2011). pH meter product manual item 2162 S, Woodridge, IL.
TPS Pty Ltd. (2012). Product manual of pH, ORP, temp meter Model WP-80D, Queensland, Australia.
Trivedi, N., Gupta, V., Kumar, M., Kumari, P., Reddy, C. R. K., and Jha, B. (2011). “An alkali-halotolerant cellulase from Bacillus flexus isolated from green seaweed Ulva lactuca.” Carbohydr. Polym., 83(2), 891–897.
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©2018 American Society of Civil Engineers.
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Received: Feb 7, 2017
Accepted: Nov 21, 2017
Published online: Mar 19, 2018
Published in print: Jun 1, 2018
Discussion open until: Aug 19, 2018
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