Transcriptional and Physiological Responses of Nitrosococcus mobilis to Copper Exposure
Publication: Journal of Environmental Engineering
Volume 137, Issue 5
Abstract
This research examined the dynamic physiological and transcriptional responses of Nitrosococcus mobilis, an unsquenced ammonia-oxidizing bacterium, to exposure. exposure caused decreases in N. mobilis nitrite production and oxygen uptake rates, and the release of intercellular suggested that damaged the outer-membrane of N. mobilis cells. Shotgun DNA microarrays identified five previously unsequenced genes that were up- or down-regulated in response to exposure. The up-regulated putative efflux protein (HP 1900) and a copper containing NnrS protein (HP 1696) were found to correlate with concentrations. The up-regulation of these genes may be useful as a bioindicator of the presence of in natural and engineered systems. Finally, the expression of amoA and hao genes encoding the sole metabolic enzymes ammonia monooxygenase and hydroxylamine oxidoreductase, respectively, were measured. While hao expression did not change upon exposure to , amoA expression increased upon exposure to slightly inhibitory concentrations of and decreased upon exposure to more severe inhibitory concentrations. This suggests that N. mobilis will adjust amoA expression based on available and energy.
Get full access to this article
View all available purchase options and get full access to this article.
Acknowledgments
We thank Brad Dubbles for his help with the growth and harvesting of the large volumes of N. mobilis necessary for the experiments, and Norman Hommes and Luis Sayavedra-Soto for their valuable discussions and general expertise on ammonia-oxidizing bacteria. Special thanks is owing to Daniel J. Arp for his valuable expertise on ammonia-oxidizing bacteria and discussions regarding the content and presentation of this manuscript. We also acknowledge Caprice Rosato and Scott Givan at the Oregon State University Center for Genome Research and Biocomputing for help in design, construction, implementation, and analysis of the shotgun DNA microarrays. This research was supported by funding provided to R. Ely by the Yale Faculty of Engineering, the Hellman Family Fellowship (Yale University), the Dean’s Award (Yale University), and by the Department of Biological and Ecological Engineering (Oregon State University). Tyler Radniecki is the recipient of a National Science Foundation Graduate Fellowship.
References
American Public Health Association (APHA). (1995). “Standard methods for the examination of water and wastewater.” 3120B, Inductively coupled plasma (ICP) method.
Arp, D. J., Sayavedra-Soto, L. A., and Hommes, N. G. (2002). “Molecular biology and biochemistry of ammonia oxidation by Nitrosomonas europaea.” Arch. Microbiol., 178(4), 250-–255.
Avery, S., Howlett, N., and Radice, S. (1996). “Copper toxicity towards Saccharomyces cerevisiae: Dependence on plasma membrane fatty acid composition.” Appl. Environ. Microbiol., 62(11), 3960–3966.
Bartnikas, T. B., Wang, Y., Bobo, T., Veselov, A., Scholes, C. P., Shapleigh, J. P. (2002). “Characterization of a member of the NnrR regulon in Rhodobacter sphaeroides 2.4.3 encoding a haem-copper protein.” Microbiology, 148(Pt 3), 825–833.
Braam, F., and Klapwijk, A. (1981). “Effect of copper on nitrification in activated sludge.” Water Res., 15(9), 1093–1098.
Calli, B., Tas, N., Mertoglu, B., Inanc, B., and Ozturk, I. (2003). “Molecular analysis of microbial communities in nitrification and denitrification reactors treating high ammonia leachate.” J. Environ. Sci. Health A, Toxic/Hazard. Subst. Environ. Eng., 38(10), 1997–2007.
Casciotti, K. L., and Ward, B. B. (2001). “Dissimilatory nitrite reductase genes from autotrophic ammonia-oxidizing bacteria.” Appl. Environ. Microbiol., 67(5), 2213–2221.
Chain, P., et al. (2003). “Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea.” J. Bacteriol., 185(9), 2759–2773.
Chen, G. H., and Wong, M. T. (2004). “Impact of increased chloride concentration on nitrifying-activated sludge cultures.” J. Environ. Eng., 130(2), 116–125.
Choi, D. W. et al. (2003). “The membrane-associated methane monooxygenase (pMMO) and pMMO-NADH: Quinone oxidoreductase complex from Methylococcus capsulatus bath.” J. Bacteriol., 185(19), 5755–5764.
Cleveland, W. S., and Devlin, S. J. (1988). “Locally weighted regression: An approach to regression analysis by local fitting.” J. Am. Stat. Assoc., 83(403), 596–610.
Coskuner, G., and Curtis, T. P. (2002). “In situ characterization of nitrifiers in an activated sludge plant: Detection of Nitrobacter Spp.” J. Appl. Microbiol., 93(3), 431–437.
Egli, K., Langer, C., Siegrist, H. R., Zehnder, A. J. B., Wagner, M., and van der Meer, J. R. (2003). “Community analysis of ammonia and nitrite oxidizers during start-up of nitritation reactors.” Appl. Environ. Microbiol., 69(6), 3213–3222.
Ely, R. L., Hyman, M. R., Arp, D. J., Guenther, R. B., and Williamson, K. J. (1995). “A cometabolic kinetics model incorporating enzyme inhibition, inactivation, and recovery: II. Trichloroethylene degradation experiments.” Biotechnol. Bioeng., 46(3), 232–245.
Gish, W., and States, D. J. (1993). “Identification of protein coding regions by database similarity search.” Nat. Genet., 3(3), 266–272.
Hageman, R. H., and Hucklesby, D. P. (1971). “Nitrate reductase from higher plants.” Methods Enzymol., 23, 491–503.
Hooper, A. B., and Terry, K. R. (1979). “Hydroxylamine oxidoreductase of Nitrosomonas: Production of nitric oxide from hydroxylamine.” Biochim. Biophys. Acta, Enzymol., 571(1), 12–20.
Hooper, A. B., Vannelli, T., Bergmann, D. J., and Arciero, D. M. (1997). “Enzymology of the oxidation of ammonia to nitrite by bacteria.” Antonie Van Leeuwenhoek Int. J. Gen. Mol. Microbiol., 71(1-2), 59–67.
Hu, Z. Q., Chandran, K., Grasso, D., and Smets, B. F. (2003). “Impact of metal sorption and internalization on nitrification inhibition.” Environ. Sci. Technol., 37(4), 728–734.
Hyman, M. R., Sansome-Smith, A. W., Shears, J. H., and Wood, P. M. (1985). “A kinetic study of benzene oxidation to phenol by whole cells of Nitrosomonas europaea and evidence for the further oxidation of phenol to hydroquinone.” Arch. Microbiol., 143, 302–306.
Jönsson, K., Aspichueta, E., de la Sota, A., and Jansen, J. C. (2001). “Evaluation of nitrification-inhibition measurements.” Water Sci. Technol., 43(1), 201–208.
Juliastuti, S. R., Baeyens, J., Creemers, C., Bixio, D., and Lodewyckx, E. (2003). “The inhibitory effects of heavy metals and organic compounds on the net maximum specific growth rate of the autotrophic biomass in activated sludge.” J. Hazard. Mater., 100(1-3), 271–283.
Juretschko, S., et al. (1998). “Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations.” Appl. Environ. Microbiol., 64(8), 3042–3051.
Kowalchuk, G. A., and Stephen, J. R. (2001). “Ammonia-oxidizing bacteria: A model for molecular microbial ecology.” Annu. Rev. Microbiol., 55, 485–529.
Kumar, V. J., Achuthan, C., Manju, N. J., Philip, R., and Singh, I. S. B. (2008). “Activated packed bed bioreactor for rapid nitrification in brackish water hatchery systems.” J. Ind. Microbiol. Biotechnol., 36(3), 355–365.
Lee, Y. W., Ong, S. K., and Sato, C. (1997). “Effects of heavy metals on nitrifying bacteria.” Water Sci. Technol., 36(12), 69–74.
Matsumoto, S., Ishikawa, D., Saeki, G., Aoi, Y., and Tsuneda, S. (2010). “Microbial population dynamics and community structure during the formation of nitrifying granules to treat ammonia-rich inorganic wastewater.” Microb. Environ., 25(3), 164–170.
Nicholson, F. A. (2003). “An inventory of heavy metals inputs to agricultural soils in England and Wales.” Sci. Total Environ., 311(1-3), 205–219.
Nies, D. H. (1999). “Microbial heavy-metal resistance.” Appl. Microbiol. Biotechnol., 51(6), 730–750.
Okabe, S., Satoh, H., and Watanabe, Y. (1999). “In situ analysis of nitrifying biofilms as determined by in situ hybridization and the use of microelectrodes.” Appl. Environ. Microbiol., 65(7), 3182–3191.
Orlov, D. S. (2002). “Potassium release, a useful tool for studying antimicrobial peptides.” J. Microbiol. Meth., 49(3), 325–328.
Patterson, J. W., Minear, R. A., Gasca, E., and Petropoulou, C. (1998). Industrial discharges of metals to water, Ann Arbor Press, Chelsea, MI.
Peirson, S. N., Butler, J. N., and Foster, R. G. (2003). “Experimental validation of novel and conventional approaches to quantitative real-time PCR data analysis.” Nucleic Acids Res., 31(14), 73e.
Purkhold, U., Pommerening-Roser, A., Juretschko, S., Schmid, M. C., Koops, H. P., and Wagner, M. (2000). “Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: Implications for molecular diversity surveys.” Appl. Environ. Microbiol., 66(12), 5368–5382.
Radniecki, T. S., and Ely, R. L. (2008). “Zinc chloride inhibition of Nitrosococcus mobilis.” Biotechnol. Bioeng., 99(5), 1085–1095.
Robins, R. G., et al. (1997). “Chemical, physical and biological interaction at the Berkeley Pit, Butte, Montana.” Proc., Tailings and Mine Waste, Balkeema Press, Rotterdam, 521–541.
Rodriguez Montelongo, L., de la Cruz-Rodriguez, L. C., Farias, R. N., and Massa, E. M. (1993). “Membrane-associated redox cycling of copper mediates hydroperoxide toxicity in Escherichia coli.” Biochim. Biophys. Acta, Biomembr., 1144(1), 77–84.
Rowan, A. K., et al. (2003). “A comparitive study of ammonia-oxidizing bacteria in lab-scale industrial wastewater treatment reactors.” Water Sci. Technol., 48(3), 17–24.
Saal, L. H., Troein, C., Vallon-Christersson, J., Gruvberger, S., Borg, A., and Peterson, C. (2002). “BioArray Software Environment: A platform for comprehensive management and analysis of microarray data.” Genome Biol., 3(8).
Sato, C., Leung, S. W., and Schnoor, J. L. (1988). “Toxic response of Nitrosomonas europaea to copper in inorganic medium and wastewater.” Water Res., 22(9), 1117–1127.
Schramm, A., de Beer, D., Wagner, M., and Amann, R. (1998). “Identification and activities in situ of Nitrosospira and Nitrospira spp. as dominant populations in a nitrifying fluidized bed reactor.” Appl. Environ. Microbiol., 64(9), 3480–3485.
Sörme, L. and Lagerkvist, R. (2002). “Sources of heavy metals in urban wastewater in Stockholm.” Sci. Total Environ., 298(1-3), 131–145.
Stein, L. Y. (2007). “Whole-genome analysis of the ammonia-oxidizing bacterium, Nitrosomonas eutropha C91: Implications for niche adaptation.” Environ. Microbiol., 9(12), 2993–3007.
Subramanian, M., Chander, R., Krishna, M., and Chattopadhyay, S. (2007). “Involvement of cytoplasmic membrane damage in the copper (II)-dependent cytotoxicity of a novel naturally occurring tripyrrole.” Biochim. Biophys. Acta, Gen. Subj., 1770(1), 143–149.
Suwalsky, M., Ungerer, B., Quevedo, L., Aguilar, F., and Sotomayor, C. P. (1998). “ ions interact with cell membranes.” J. Inorg. Biochem., 70(3-4), 233–238.
Tomlinson, T. G., Boon, A. G., and Trotman, C. N. A. (1966). “Inhibition of nitrification in activated sludge process of sewage disposal.” J. Appl. Bacteriol. Supp., 29(2), 266–291.
U.S. Environmental Protection Agency (USEPA). (1993). Process design manual: Nitrogen control, U.S. Environmental Protection Agency, Washington, DC.
Wagner, M., and Loy, A. (2002). “Bacterial community composition and function in sewage treatment systems.” Curr. Opin. Biotechnol., 13(3), 218–227.
Wagner, M., Noguera, D. R., Juretschko, S., Rath, G., Koops, H. P., and Schleifer, K. H. (1998). “Combining fluorescent in situ hybridization (fish) with cultivation and mathematical modeling to study population structure and function of ammonia-oxidizing bacteria in activated sludge.” Water Sci. Technol., 37(4-5), 441–449.
Yang, Y. H., et al. (2002). “Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation.” Nucleic Acids Res., 30(4), 15e.
Yin, S. X., Fuangthong, M., Laratta, W. P., and Shapleigh, J. P. (2003). “Use of a green fluorescent protein-based reporter fusion for detection of nitric oxide produced by denitrifiers.” Appl. Environ. Microbiol., 69(7), 3938–3944.
Information & Authors
Information
Published In
Copyright
© 2011 American Society of Civil Engineers.
History
Received: Jun 11, 2010
Accepted: Oct 17, 2010
Published online: Nov 19, 2010
Published in print: May 1, 2011
Authors
Metrics & Citations
Metrics
Citations
Download citation
If you have the appropriate software installed, you can download article citation data to the citation manager of your choice. Simply select your manager software from the list below and click Download.