Technical Papers
Jun 16, 2023

Various Bacterial Attachment Functions and Modeling of Biomass Distribution in MICP Implementations

Publication: Journal of Geotechnical and Geoenvironmental Engineering
Volume 149, Issue 9

Abstract

Microbial induced calcium carbonate precipitation (MICP) offers a robust technique to improve strength and stiffness properties of subsurface soils supporting infrastructures. Several unknown factors, including the MICP reactive transport parameters, however, limit the ability to predict spatial distribution of calcium carbonate (CaCO3) precipitation within a subsurface area and with depth. As it was shown that calcium carbonate distribution is highly affected by biomass profiles in subdomains, five bacteria attachment models (constant-rate, power-law, exponential, gamma distribution, and “cstr based on colloid attachment theory”) were calibrated here using data from both small- and large-scale testing programs. Out of the five models, colloid attachment theory with modified velocity and straining terms was shown to be the most promising approach in yielding the most fitted CaCO3 distribution compared with the experimental data. A new parameter, cstr, was incorporated to modify straining and the constraint peak value of biomass attachment due to straining at distances larger than a 0.14×sample  size. Using the results from the numerical simulations, relationships were developed for velocity and straining coefficients of “the cstr based on colloid attachment theory” (hereafter “colloid attachment cstr”) as a function of bacteria size, soil particle size, sample size, volume of injected bacteria, and soil pore volume.

Get full access to this article

View all available purchase options and get full access to this article.

Data Availability Statement

Some or all data, models, or code that support the findings of this study are available from the corresponding author upon reasonable request.

Acknowledgments

The authors would like to acknowledge the support of North Carolina State University. The authors would like to thank Dr. Jinung Do for his continuous support with providing experimental data. Also, the authors thank the COMSOL support center for their technical support with the model development.

References

Al Qabany, A., and K. Soga. 2013. “Effect of chemical treatment used in MICP on engineering properties of cemented soils.” Géotechnique 63 (4): 331–339. https://doi.org/10.1680/geot.SIP13.P.022.
Al Qabany, A., K. Soga, and J. C. Santamarina. 2012. “Factors affecting efficiency of microbially induced calcite precipitation.” J. Geotech. Geoenviron. Eng. 138 (8): 992–1001. https://doi.org/10.1061/(ASCE)GT.1943-5606.0000666.
Barkouki, T., B. Martinez, B. Mortensen, T. Weathers, J. DeJong, and N. Spycher. 2011. “Forward and inverse bio-geochemical modeling of microbially induced calcium carbonate precipitation in half-meter column experiments.” Transp. Porous Media 90 (1): 23–39. https://doi.org/10.1007/s11242-011-9804-z.
Bolster, C. H., A. L. Mills, G. M. Hornberger, and J. S. Herman. 1999. “Spatial distribution of deposited bacteria following miscible displacement experiments in intact cores.” Water Resour. Res. 35 (6): 1797–1807. https://doi.org/10.1029/1999WR900031.
Bouwer, E., H. Rijnaarts, A. Cunningham, and R. Gerlach. 2000. “Biofilms II: Process analysis and applications.” In Biofilms in porous media, 123–158. New York: Wiley.
Bradford, S. A., M. Bettahar, J. Simunek, and M. T. Van Genuchten. 2004. “Straining and attachment of colloids in physically heterogeneous porous media.” Vadose Zone J. 3 (2): 384–394. https://doi.org/10.2136/vzj2004.0384.
Bradford, S. A., J. Simunek, M. Bettahar, M. T. van Genuchten, and S. R. Yates. 2006. “Significance of straining in colloid deposition: Evidence and implications.” Water Resour. Res. 42 (12): W12S15. https://doi.org/10.1029/2005WR004791.
Bradford, S. A., J. Simunek, M. Bettahar, M. T. H. Van Genuchten, and S. R. Yates. 2003. “Modeling colloid attachment, straining, and exclusion in saturated porous media.” Environ. Sci. Technol. 37 (10): 2242–2250. https://doi.org/10.1021/es025899u.
Bradford, S. A., S. Torkzaban, and S. L. Walker. 2007. “Coupling of physical and chemical mechanisms of colloid straining in saturated porous media.” Water Res. 41 (13): 3012–3024. https://doi.org/10.1016/j.watres.2007.03.030.
Cheng, L., R. Cord-Ruwisch, and M. A. Shahin. 2013. “Cementation of sand soil by microbially induced calcite precipitation at various degrees of saturation.” Can. Geotech. J. 50 (1): 81–90. https://doi.org/10.1139/cgj-2012-0023.
Compere, F., G. Porel, and F. Delay. 2001. “Transport and retention of clay particles in saturated porous media: Influence of ionic strength and pore velocity.” J. Contam. Hydrol. 49 (1–2): 1–21. https://doi.org/10.1016/S0169-7722(00)00184-4.
Cunningham, A. B., R. R. Sharp, F. Caccavo, and R. Gerlach. 2007. “Effects of starvation on bacterial transport through porous media.” Adv. Water Resour. 30 (6–7): 1583–1592. https://doi.org/10.1016/j.advwatres.2006.05.018.
Cushing, R. S., and D. F. Lawler. 1998. “Depth filtration: Fundamental investigation through three-dimensional trajectory analysis.” Environ. Sci. Technol. 32 (23): 3793–3801. https://doi.org/10.1021/es9707567.
Cuthbert, M. O., L. A. McMillan, S. Handley-Sidhu, M. S. Riley, D. J. Tobler, and V. R. Phoenix. 2013. “A field and modeling study of fractured rock permeability reduction using microbially induced calcite precipitation.” Environ. Sci. Technol. 47 (23): 13637–13643. https://doi.org/10.1021/es402601g.
DeJong, J. T., M. B. Fritzges, and K. Nüsslein. 2006. “Microbially induced cementation to control sand response to undrained shear.” J. Geotech. Geoenviron. Eng. 132 (11): 1381–1392. https://doi.org/10.1061/(ASCE)1090-0241(2006)132:11(1381).
DeJong, J. T., B. M. Mortensen, B. M. Martinez, and D. C. Nelson. 2010. “Bio-mediated soil improvement.” Ecol. Eng. 36 (2): 197–210. https://doi.org/10.1016/j.ecoleng.2008.12.029.
Do, J., B. M. Montoya, and M. A. Gabr. 2019. “Debonding of microbially induced carbonate precipitation-stabilized sand by shearing and erosion.” Geomech. Eng. 17 (5): 429–438. https://doi.org/10.12989/gae.2019.17.5.429.
Ebigbo, A., A. Phillips, R. Gerlach, R. Helmig, A. B. Cunningham, H. Class, and L. H. Spangler. 2012. “Darcy-scale modeling of microbially induced carbonate mineral precipitation in sand columns.” Water Resour. Res. 48 (Jun): W07519. https://doi.org/10.1029/2011WR011714.
El Mountassir, G., R. J. Lunn, H. Moir, and E. MacLachlan. 2014. “Hydrodynamic coupling in microbially mediated fracture mineralization: Formation of self-organized groundwater flow channels.” Water Resour. Res. 50 (1): 1–16. https://doi.org/10.1002/2013WR013578.
Faeli, Z. 2021. “Reactive flow and transport analysis in unsaturated and saturated subsurface profiles.” Ph.D. thesis, Dept. of Civil Engineering, North Carolina State Univ.
Faeli, Z., B. Montoya, and M. Gabr. 2022. “Reactive transport modeling of microbial induced calcium carbonate precipitation utilizing various configurations of injection wells.” In GeoCongress 2022: Soil Improvement, Geosynthetics, and Innovative Geomaterials, Geotechnical Special Publication 331, edited by A. Lemnitzer and A. W. Stuedlein, 396–407. Reston, VA: ASCE.
Ginn, T. R. 1995. A brief review of bacterial transport in natural porous media. Richland, WA: Pacific Northwest National Laboratory. https://doi.org/10.2172/197807.
Ginn, T. R., B. D. Wood, K. Nelson, T. D. Scheibe, E. M. Murphy, and T. P. Clement. 2002. “Processes in microbial transport in the natural subsurface.” Adv. Water Resour. 25 (8–12): 1017–1042. https://doi.org/10.1016/S0309-1708(02)00046-5.
Gomez, M. G., C. M. Anderson, C. M. R. Graddy, J. T. DeJong, D. C. Nelson, and T. R. Ginn. 2017. “Large-scale comparison of bioaugmentation and biostimulation approaches for biocementation of sands.” J. Geotech. Geoenviron. Eng. 143 (5): 04016124. https://doi.org/10.1061/(ASCE)GT.1943-5606.0001640.
Harkes, M. P., L. A. Van Paassen, J. L. Booster, V. S. Whiffin, and M. C. van Loosdrecht. 2010. “Fixation and distribution of bacterial activity in sand to induce carbonate precipitation for ground reinforcement.” Ecol. Eng. 36 (2): 112–117. https://doi.org/10.1016/j.ecoleng.2009.01.004.
Harvey, R. W., and S. P. Garabedian. 1991. “Use of colloid filtration theory in modeling movement of bacteria through a contaminated sandy aquifer.” Environ. Sci. Technol. 25 (1): 178–185. https://doi.org/10.1021/es00013a021.
Harvey, R. W., N. E. Kinner, D. MacDonald, D. W. Metge, and A. Bunn. 1993. “Role of physical heterogeneity in the interpretation of small-scale laboratory and field observations of bacteria, microbial-sized microsphere, and bromide transport through aquifer sediments.” Water Resour. Res. 29 (8): 2713–2721. https://doi.org/10.1029/93WR00963.
Hommel, J., E. Lauchnor, R. Gerlach, A. B. Cunningham, A. Ebigbo, R. Helmig, and H. Class. 2016. “Investigating the influence of the initial biomass distribution and injection strategies on biofilm-mediated calcite precipitation in porous media.” Transp. Porous Media 114 (2): 557–579. https://doi.org/10.1007/s11242-015-0617-3.
Hommel, J., E. Lauchnor, A. Phillips, R. Gerlach, A. B. Cunningham, R. Helmig, A. Ebigbo, and H. Class. 2015. “A revised model for microbially induced calcite precipitation: Improvements and new insights based on recent experiments.” Water Resour. Res. 51 (5): 3695–3715. https://doi.org/10.1002/2014WR016503.
Li, X., P. Zhang, C. L. Lin, and W. P. Johnson. 2005. “Role of hydrodynamic drag on microsphere deposition and re-entrainment in porous media under unfavorable conditions.” Environ. Sci. Technol. 39 (11): 4012–4020. https://doi.org/10.1021/es048814t.
Martinez, B. C. 2012. “Up-scaling of microbial induced calcite precipitation in sands for geotechnical ground improvement.” Ph.D. dissertation, Dept. of Civil and Environmental Engineering, Univ. of California, Davis.
Martinez, B. C., J. T. DeJong, and T. R. Ginn. 2014. “Bio-geochemical reactive transport modeling of microbial induced calcite precipitation to predict the treatment of sand in one-dimensional flow.” Comput. Geotech. 58 (May): 1–13. https://doi.org/10.1016/j.compgeo.2014.01.013.
Minto, J. M., R. J. Lunn, and G. El Mountassir. 2019. “Development of a reactive transport model for field-scale simulation of microbially induced carbonate precipitation.” Water Resour. Res. 55 (8): 7229–7245. https://doi.org/10.1029/2019WR025153.
Mitchell, J. K., and J. C. Santamarina. 2005. “Biological considerations in geotechnical engineering.” J. Geotech. Geoenviron. Eng. 131 (10): 1222–1233. https://doi.org/10.1061/(ASCE)1090-0241(2005)131:10(1222).
Montoya, B. M., J. Do, and M. A. Gabr. 2021. “Distribution and properties of microbially induced carbonate precipitation in underwater sand bed.” J. Geotech. Geoenviron. Eng. 147 (10): 04021098. https://doi.org/10.1061/(ASCE)GT.1943-5606.0002607.
Murphy, E. M., and T. Ginn. 2000. “Modeling microbial processes in porous media.” Hydrogeol. J. 8 (1): 142–158. https://doi.org/10.1007/s100409900043.
Nafisi, A., B. M. Montoya, and T. M. Evans. 2020. “Shear strength envelopes of biocemented sands with varying particle size and cementation level.” J. Geotech. Geoenviron. Eng. 146 (3): 04020002. https://doi.org/10.1061/(ASCE)GT.1943-5606.0002201.
Nafisi, A., S. Safavizadeh, and B. M. Montoya. 2019. “Influence of microbe and enzyme-induced treatments on cemented sand shear response.” J. Geotech. Geoenviron. Eng. 145 (9): 06019008. https://doi.org/10.1061/(ASCE)GT.1943-5606.0002111.
Nassar, M. K., D. Gurung, M. Bastani, T. R. Ginn, B. Shafei, M. G. Gomez, C. M. R. Graddy, D. C. Nelson, and J. T. DeJong. 2018. “Large-scale experiments in microbially induced calcite precipitation (MICP): Reactive transport model development and prediction.” Water Resour. Res. 54 (1): 480–500. https://doi.org/10.1002/2017WR021488.
Richards, L. A. 1931. “Capillary conduction of liquids through porous mediums.” Physics 1 (5): 318–333.
Roohi, M., M. Faeli, M. Irani, and E. Shamsaei. 2021. “Calculation of land subsidence and changes in soil moisture and salinity using remote sensing techniques.” Environ. Earth Sci. 80 (12): 423. https://doi.org/10.1007/s12665-021-09723-2.
San Pablo, A. C. M., et al. 2020. “Meter-scale biocementation experiments to advance process control and reduce impacts: Examining spatial control, ammonium by-product removal, and chemical reductions.” J. Geotech. Geoenviron. Eng. 146 (11): 04020125. https://doi.org/10.1061/(ASCE)GT.1943-5606.0002377.
Silliman, S. E. 1995. “Particle transport through two-dimensional, saturated porous media: Influence of physical structure of the medium.” J. Hydrol. 167 (1–4): 79–98. https://doi.org/10.1016/0022-1694(94)02615-I.
Stocks-Fischer, S., J. K. Galinat, and S. S. Bang. 1999. “Microbiological precipitation of CaCO3.” Soil Biol. Biochem. 31 (11): 1563–1571. https://doi.org/10.1016/S0038-0717(99)00082-6.
Tobler, D. J., M. O. Cuthbert, and V. R. Phoenix. 2014. “Transport of Sporosarcina pasteurii in sandstone and its significance for subsurface engineering technologies.” Appl. Geochem. 42 (Mar): 38–44. https://doi.org/10.1016/j.apgeochem.2014.01.004.
Tong, M., X. Li, C. N. Brow, and W. P. Johnson. 2005. “Detachment influenced transport of an adhesion-deficient bacterial strain within water-reactive porous media.” Environ. Sci. Technol. 39 (8): 2500–2508. https://doi.org/10.1021/es049013t.
Tufenkji, N., and M. Elimelech. 2005. “Breakdown of colloid filtration theory: Role of the secondary energy minimum and surface charge heterogeneities.” Langmuir 21 (3): 841–852. https://doi.org/10.1021/la048102g.
van Paassen, L. A., M. P. Harkes, G. A. van Zwieten, W. H. van Der Zon, W. R. L. van Der Star, and M. C. M. van Loosdrecht. 2009. “Scale up of BioGrout: A biological ground reinforcement method.” In Proc., 17th Int. Conf. on Soil Mechanics and Geotechnical Engineering: The Academia and Practice of Geotechnical Engineering, 2328–2333. Amsterdam, Netherlands: IOS Press.
van Wijngaarden, W. K., L. A. van Paassen, F. J. Vermolen, G. A. M. van Meurs, and C. Vuik. 2016. “Simulation of front instabilities in density-driven flow using a reactive transport model for biogrout combined with a randomly distributed permeability field.” Transp. Porous Media 112 (2): 333–359. https://doi.org/10.1007/s11242-016-0649-3.
van Wijngaarden, W. K., F. J. Vermolen, G. A. M. van Meurs, and C. Vuik. 2011. “Modelling biogrout: A new ground improvement method based on microbial-induced carbonate precipitation.” Transp. Porous Media 87 (2): 397–420. https://doi.org/10.1007/s11242-010-9691-8.
van Wijngaarden, W. K., F. J. Vermolen, G. A. M. van Meurs, and C. Vuik. 2012. “A mathematical model and analytical solution for the fixation of bacteria in biogrout.” Transp. Porous Media 92 (3): 847–866. https://doi.org/10.1007/s11242-011-9937-0.
Whiffin, V. S., L. A. van Paassen, and M. P. Harkes. 2007. “Microbial carbonate precipitation as a soil improvement technique.” Geomicrobiol. J. 24 (5): 417–423. https://doi.org/10.1080/01490450701436505.
Zamani, A., and B. M. Montoya. 2016. “Permeability reduction due to microbial induced calcite precipitation in sand.” In Geo-Chicago 2016: Sustainability and Resiliency in Geotechnical Engineering, Geotechnical Special Publication 269, edited by D. Zekkos, A. Farid, A. De, K. R. Reddy, and N. Yesiller, 94–103. Reston, VA: ASCE. https://doi.org/10.1061/9780784480120.011.
Zeng, C., Y. Veenis, C. A. Hall, E. S. Young, W. R. L. van der Star, J. Zheng, and L. A. van Paassen. 2021. “Experimental and numerical analysis of a field trial application of microbially induced calcite precipitation for ground stabilization.” J. Geotech. Geoenviron. Eng. 147 (7): 05021003. https://doi.org/10.1061/(ASCE)GT.1943-5606.0002545.
Zhang, T., and I. Klapper. 2010. “Mathematical model of biofilm induced calcite precipitation.” Water Sci. Technol. 61 (11): 2957–2964. https://doi.org/10.2166/wst.2010.064.

Information & Authors

Information

Published In

Go to Journal of Geotechnical and Geoenvironmental Engineering
Journal of Geotechnical and Geoenvironmental Engineering
Volume 149Issue 9September 2023

History

Received: Feb 16, 2022
Accepted: Feb 28, 2023
Published online: Jun 16, 2023
Published in print: Sep 1, 2023
Discussion open until: Nov 16, 2023

Permissions

Request permissions for this article.

Authors

Affiliations

Geotechnical Engineer, DNV Energy USA, Inc., 9665 Chesapeake Dr., San Diego, CA 92123; formerly, Graduate Research Assistant, Dept. of Civil, Construction, and Environmental Engineering, North Carolina State Univ., Raleigh, NC 27695 (corresponding author). ORCID: https://orcid.org/0000-0002-4870-3720. Email: [email protected]
Associate Professor, Dept. of Civil, Construction, and Environmental Engineering, North Carolina State Univ., Raleigh, NC 27695. ORCID: https://orcid.org/0000-0001-7669-8861. Email: [email protected]
Distinguished Professor, Dept. of Civil, Construction, and Environmental Engineering, North Carolina State Univ., Raleigh, NC 27695. ORCID: https://orcid.org/0000-0001-6396-9730. Email: [email protected]

Metrics & Citations

Metrics

Citations

Download citation

If you have the appropriate software installed, you can download article citation data to the citation manager of your choice. Simply select your manager software from the list below and click Download.

View Options

Get Access

Access content

Please select your options to get access

Log in/Register Log in via your institution (Shibboleth)
ASCE Members: Please log in to see member pricing

Purchase

Save for later Information on ASCE Library Cards
ASCE Library Cards let you download journal articles, proceedings papers, and available book chapters across the entire ASCE Library platform. ASCE Library Cards remain active for 24 months or until all downloads are used. Note: This content will be debited as one download at time of checkout.

Terms of Use: ASCE Library Cards are for individual, personal use only. Reselling, republishing, or forwarding the materials to libraries or reading rooms is prohibited.
ASCE Library Card (5 downloads)
$105.00
Add to cart
ASCE Library Card (20 downloads)
$280.00
Add to cart
Buy Single Article
$35.00
Add to cart

Get Access

Access content

Please select your options to get access

Log in/Register Log in via your institution (Shibboleth)
ASCE Members: Please log in to see member pricing

Purchase

Save for later Information on ASCE Library Cards
ASCE Library Cards let you download journal articles, proceedings papers, and available book chapters across the entire ASCE Library platform. ASCE Library Cards remain active for 24 months or until all downloads are used. Note: This content will be debited as one download at time of checkout.

Terms of Use: ASCE Library Cards are for individual, personal use only. Reselling, republishing, or forwarding the materials to libraries or reading rooms is prohibited.
ASCE Library Card (5 downloads)
$105.00
Add to cart
ASCE Library Card (20 downloads)
$280.00
Add to cart
Buy Single Article
$35.00
Add to cart

Media

Figures

Other

Tables

Share

Share

Copy the content Link

Share with email

Email a colleague

Share