Abstract
Survival and average body weight of Litopenaeus vannamei after application of Bacillus barbaricus SSB-119 in 111-day culture experiments was increased compared with the control pond shrimps. Application of SSB-119 was scheduled in three different phases, first 40 days (5 L/ha), second 40 days (10 L/ha), and end of the experiment (15 L/ha). The average shrimp survival rate was notably poorer, 59.1% ± 1.5% and 66.8% ± 2.1% in the control ponds C-1 and C-2 (P < 0.001), respectively. Significant variances (P < 0.05) in the animals average weight between the experiment (35.21 g ± 0.1 g in T-1 and 34.26 g ± 0.1 g in T-2) and control (27.18 g ± 0.1 g in C-1 and 29.08 g ± 0.1 g in C-2) groups were seen in the statistical analysis. The amylase protein sequences of 84 microorganisms were obtained from the database of National Center for Biotechnology Information (NCBI). To reveal the evolutionary relationship between them, multiple sequence alignment and a phylogenetic tree were constructed. The functional motifs and domains of the protein sequences were also detected. Three motifs are present in each bacterial and fungal family. Bacterial motifs were of alpha-amylase protein and motifs from fungal protein sequences were of fungal lignin peroxidase protein sequence representing their role in the fundamental and catalytic attributes of lignin peroxidase.
Get full access to this article
View all available purchase options and get full access to this article.
References
Acer, O., F. M. Bekler, H. Pirinççioğlu, R. G. Güven, and K. Güven. 2016. “Purification and characterization of thermostable and detergent-stable α-amylase from Anoxybacillus sp. AH1.” Food Technol. Biotechnol. 54: 70–77. https://doi.org/10.17113/ftb.54.01.16.4122.
Ape, F., E. Manini, G. M. Quero, G. M. Luna, G. Sarà, P. Vecchio, P. Brignoli, S. Ansferri, and S. Mirto. 2019. “Biostimulation of in situ microbial degradation processes in organically-enriched sediments mitigates the impact of aquaculture.” Chemosphere 226: 715–725. https://doi.org/10.1016/j.chemosphere.2019.03.178.
Asad, W., M. Asif, and S. A. Rasool. 2011. “Extracellular enzyme production by indigenous thermophilic bacteria: Partial purification and characterization of α-amylase by Bacillus sp. WA21.” Pak. J. Bot. 43 (2): 1045–1052.
Asoodeh, A., A. Alemi, A. Heydari, and J. Akbari. 2013. “Purification and biochemical characterization of an acidophilic amylase from a newly isolated Bacillus sp. DR90.” Extremophiles 17 (2): 339–348. https://doi.org/10.1007/s00792-013-0520-1.
Austin, B., and X. H. Zhang. 2006. “Vibrio harveyi: A significant pathogen of marine vertebrates and invertebrates.” Lett. Appl. Microbiol. 43 (2): 119–124. https://doi.org/10.1111/j.1472-765X.2006.01989.x.
Bandyopadhyay, P., B. Sarkar, A. Mahanty, R. M. Rathore, and B. C. Patra. 2015. “Dietary administered Bacillus sp. PP9 enhances growth, nutrition and immunity in Cirrhinus mrigala (Hamilton).” Proc. Natl. Acad. Sci. India, Sect B Biol. Sci. 85: 759–766. https://doi.org/10.1007/s40011-015-0561-6.
Banerjee, A., A. Jana, B. R. Pati, K. C. Mondal, and P. K. Das Mohapatra. 2012. “Characterization of tannase protein sequences of bacteria and fungi: An in silico study.” Protein J. 31 (4): 306–327. https://doi.org/10.1007/s10930-012-9405-x.
Barman, P., S. Raut, S. K. Sen, U. Shaikh, P. Bandyopadhyay, and P. K. D. Das Mohapatra. 2017. “Effect of a three-component bacterial consortium in white shrimp farming for growth, survival and water quality management.” Acta Biol. Szegediensis 61 (1): 35–44.
Bekler, F. M., O. Acer, and K. Güven. 2015. “Production and purification of novel thermostable alkaline protease from Anoxybacillus sp. KP1.” Cell. Mol. Biol. 61 (4): 113–120.
Caruso, G. 2014. “Effects of aquaculture activities on microbial assemblages.” Oceanography 2 (2): e107. https://doi.org/10.4172/2332-2632.1000e107.
Chen, W.-M., J.-S. Chang, C.-H. Chiu, S.-C. Chang, W.-C. Chen, and C.-M. Jiang. 2005. “Caldimonas taiwanensis sp. nov., a amylase producing bacterium isolated from a hot spring.” Syst. Appl. Microbiol. 28 (5): 415–420. https://doi.org/10.1016/j.syapm.2005.02.008.
Corre Jr V. L., R. L. Janeo, C. M. A. Caipang, and A. T. Calpe. 2000. “Use of probiotics and reservoir with “green water” and other tips for a successful shrimp culture.” Aquac Asia V 34–38.
Edwards, P. 2015. “Aquaculture environment interactions: Past, present and likely future trends.” Aquacult. 447: 2–14.
Fabiano, M., D. Marrale, and C. Misic. 2003. “Bacteria and organic matter dynamics during a bioremediation treatment of organic-rich harbour sediments.” Mar. Pollut. Bull. 46 (9): 1164–1173. https://doi.org/10.1016/S0025-326X(03)00166-8.
Gough, J., K. Karplus, R. Hughey, and C. Chothia. 2001. “Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure.” J. Mol. Biol. 313 (4): 903–919. https://doi.org/10.1006/jmbi.2001.5080.
Guruprasad, K., B. V. B. Reddy, and M. W. Pandit. 1990. “Correlation between stability of a protein and its dipeptide composition: A novel approach for predicting in vivo stability of a protein from its primary sequence.” Protein Eng. 4 (2): 155–161. https://doi.org/10.1093/protein/4.2.155.
Janeo, R. L., V. L. Corre, and T. Sakata. 2009. “Water quality and phytoplankton stability in response to application frequency of bioaugmentation agent in shrimp ponds.” Aquacult. Eng. 40 (3): 120–125. https://doi.org/10.1016/j.aquaeng.2009.01.001.
Jardine, J. L., S. Stoychev, V. Mavumengwana, and E. Ubomba-Jaswa. 2018. “Screening of potential bioremediation enzymes from hot spring bacteria using conventional plate assays and liquid chromatography—tandem mass spectrometry (Lc-Ms/Ms).” J. Environ. Manage. 223: 787–796. https://doi.org/10.1016/j.jenvman.2018.06.089.
Li, Y., D. Niu, L. Zhang, Z. Wang, and G. Shi. 2013. “Purification, characterization and cloning of a thermotolerant isoamylase produced from Bacillus sp. CICIM 304.” J. Ind. Microbiol. Biotechnol. 40: 437–446.
Lim, J. W., D. Ha, J. Lee, S. K. Lee, and T. Kim. 2015b. “Review of micro/nanotechnologies for microbial biosensors.” Front. Bioeng. Biotechnol. 3: 61. https://doi.org/10.3389/fbioe.2015.00061.
Liu, X., J. C. Steele, and X. Z. Meng. 2017. “Usage, residue, and human health risk of antibiotics in Chinese aquaculture: A review.” Environ. Pollut. 223: 161–169. https://doi.org/10.1016/j.envpol.2017.01.003.
Luna, G. M., C. Corinaldesi, A. Dell’Anno, A. Pusceddu, and R. Danovaro. 2013. “Impact of aquaculture on benthic virus-prokaryote interactions in the Mediterranean Sea.” Water Res. 47 (3): 1156–1168. https://doi.org/10.1016/j.watres.2012.11.036.
Panda, M. K., M. K. Sahu, and K. Tayung. 2013. “Isolation and characterization of a thermophilic Bacillus sp. with protease activity isolated from hot spring of Tarabalo, Odisha, India.” Iran. J. Microbiol. 5 (2): 159–165.
Rengpipat, S., W. Phianphak, S. Piyatiratitivorakul, and P. Menasveta. 1998. “Effects of a probiotic bacterium on black tiger shrimp Penaeus monodon survival and growth.” Aquaculture 167 (3–4): 301–313. https://doi.org/10.1016/S0044-8486(98)00305-6.
Rogers, S., R. Wells, and M. Rechsteiner. 1986. “Amino acid sequences common to rapidly degraded proteins: The PEST hypothesis.” Science 234 (4774): 364–368. https://doi.org/10.1126/science.2876518.
Sakami, T., H. Yokoyama, and Y. Ishihi. 2005. “Microbial hydrolytic enzyme activity in the sediments of a net cage aquaculture area.” Fish. Sci. 71 (2): 271–278. https://doi.org/10.1111/j.1444-2906.2005.00960.x.
Sen, S. K., T. K. Dora, B. Bandyopadhyay, P. K. D. Mohapatra, and S. Raut. 2014. “Thermostable alpha-amylase enzyme production from hot spring isolates Alcaligenes faecalis SSB17 - statistical optimization.” Biocatal. Agric. Biotechnol. 3: 218–226. https://doi.org/10.1016/j.bcab.2014.03.005
Sen, S. K., A. Jana, P. Bandyopadhyay, P. K. Das Mohapatra, and S. Raut. 2016. “Thermostable amylase production from hot spring isolate Exiguobacterium sp: A promising agent for natural detergents.” Sustain. Chem. Pharm. 3: 59–68.
Sen, R., and N. K. Maiti. 2014. “Genomic and functional diversity of bacteria isolated from hot springs in Odisha, India.” Geomicrobiol. J. 31: 541–550. https://doi.org/10.1080/01490451.2013.850560.
Sivaramakrishnan, S., D. Gangadharan, K. M. Nampoothiri, C. R. Soccol, and A. Pandey. 2006. “α-Amylases from microbial sources—an overview on recent developments.” Food Technol. Biotechnol. 44 (2): 173–184.
Thompson, F. L., T. Lida, and J. Swings. 2004. “Biodiversity of vibrios.” Microbiol. Mol. Biol. Rev. 68 (3): 403–431. https://doi.org/10.1128/MMBR.68.3.403-431.2004.
Wang, S. L., Y.-C. Liang, and T.-W. Liang. 2011. “Purification and characterization of a novel alkali-stable α-amylase from Chryseobacterium taeanense TKU001, and application in antioxidant and prebiotic.” Process Biochem. 46 (3): 745–750. https://doi.org/10.1016/j.procbio.2010.11.022.
Wang, Y. B., and Z. R. Xu. 2006. “Effect of probiotics for common carp (Cyprinus carpio) based on growth performance and digestive enzyme activities.” Anim Feed Sci Technol. 127: 283–292.
Zhang, M. L., N. Liu, C. L. Qian, Q. F. Wang, Q. Wang, Y. H. Long, Y. P. Huang, Z. H. Zhou, and X. Yan. 2014. “Phylogenetic and functional analysis of gut microbiota of a fungus-growing higher termite: Bacteroidetes from higher termites are a rich source of β-glucosidase genes.” Microb. Ecol. 68 (2): 416–425. https://doi.org/10.1007/s00248-014-0388-3.
Zhang, F., X. Yang, L. Geng, Z. Zhang, Y. Yin, and W. Li. 2015. “Purification and characterization of a novel and versatile α‐amylase from thermophilic Anoxybacillus sp. YIM 342.” Starch 68 (5–6): 446–453.
Zhang, Y. N., J. Zhao, Y. Zhou, J. Qu, J. Chen, C. Li, W. Qin, Y. Zhao, W. J. G. M. Peijnenburg. 2019. “Combined effects of dissolved organic matter, pH, ionic strength and halides on photodegradation of oxytetracycline in simulated estuarine waters.” Environ. Sci. Process. Impacts 21: 155–162.
Information & Authors
Information
Published In
Journal of Hazardous, Toxic, and Radioactive Waste
Volume 24 • Issue 4 • October 2020
Copyright
© 2020 American Society of Civil Engineers.
History
Received: Sep 10, 2019
Accepted: Feb 25, 2020
Published online: May 29, 2020
Published in print: Oct 1, 2020
Discussion open until: Oct 29, 2020
Authors
Metrics & Citations
Metrics
Citations
Download citation
If you have the appropriate software installed, you can download article citation data to the citation manager of your choice. Simply select your manager software from the list below and click Download.