Technical Papers
May 30, 2018

Evaluating Strategies to Improve Process Efficiency of Denitrification-Based MICP

Publication: Journal of Geotechnical and Geoenvironmental Engineering
Volume 144, Issue 8

Abstract

Microbially induced carbonate precipitation (MICP) through denitrification can potentially be applied as a bio-based ground improvement technique. Two strategies involving multiple batch treatments in a modified triaxial test setup were used to study the process efficiency. Both strategies aim to achieve 1 weight percentage (% by weight) of precipitated calcium carbonate (CaCO3) and differ in number of flushes, hydraulic residence time, and substrate concentrations. In the experiment with few flushes and high substrate concentrations the microbial process was inhibited, only 0.28% by weight CaCO3 was measured in the sand after 5 weeks of treatment. The regime with many flushes and low substrate concentrations stimulated microbial growth resulting in 0.65% by weight CaCO3 within the same time period. Biomass growth and nitrogen gas production were stable throughout the experiment at low concentration, reducing the hydraulic conductivity of the sand, which eventually led to clogging. Precipitation rates up to 0.26% by weight/day CaCO3 were observed. Applying a suitable substrate regime and residence time is important to limit inhibition and maintain the cell activity, allow for an efficient conversion, and generate a good precipitation rate.

Get full access to this article

View all available purchase options and get full access to this article.

Acknowledgments

This research was funded by the Dutch Ministry of Economic Affairs, through STW perspective program BioGeoCivil (11337), and was performed in close collaboration with Deltares.

References

Almeida, J. S., S. M. Julio, M. A. M. Reis, and M. J. T. Carrondo. 1995. “Nitrite inhibition of denitrification by Pseudomonas fluorescens.” Biotechnol. Bioeng. 46 (3): 194–201. https://doi.org/10.1002/bit.260460303.
Baveye, P., P. Vandevivere, B. L. Hoyle, P. C. DeLeo, and D. S. de Lozada. 1998. “Environmental impact and mechanisms of the biological clogging of saturated soils and aquifer materials.” Crit. Rev. Environ. Sci. Technol. 28 (2): 123–191. https://doi.org/10.1080/10643389891254197.
Betlach, M. R., and J. M. Tiedje. 1981. “Kinetic explanation for accumulation of nitrite, nitric oxide, and nitrous oxide during bacterial denitrification.” Appl. Environ. Microbiol. 42 (6): 1074–1084.
Burbank, M. B., T. J. Weaver, T. L. Green, B. C. Williams, and R. L. Crawford. 2011. “Precipitation of calcite by indigenous microorganisms to strengthen liquefiable soils.” Geomicrobiol. J. 28 (4): 301–312. https://doi.org/10.1080/01490451.2010.499929.
Castegnier, F., N. Ross, R. P. Chapuis, L. Deschⓔnes, and R. Samson. 2006. “Long-term persistence of a nutrient-starved biofilm in a limestone fracture.” Water Res. 40 (5): 925–934. https://doi.org/10.1016/j.watres.2005.12.038.
CEN (European Committee for Standardization). 2004. Geotechnical investigation and testing: Laboratory testing of soil. 9: Consolidated triaxial compression tests on water saturated soil. ISO/TS 17892-9:2004. Brussels, Belgium: CEN.
Chu, J., V. Stabnikov, and V. Ivanov. 2012. “Microbially induced calcium carbonate precipitation on surface or in the bulk of soil.” Geomicrobiol. J. 29 (6): 544–549. https://doi.org/10.1080/01490451.2011.592929.
Dejong, J. T., et al. 2009. “Upscaling of bio-mediated soil improvement.” In Proc., 17th Int. Conf. on Soil Mechanics and Geotechnical Engineering, edited by M. Hamza, M. Shahien, and Y. El-Mossallamy. Alexandria, Egypt: IOS Press.
Dejong, J. T., et al. 2013. “Biogeochemical process and geotechnical applications: Progress, opportunities and challenges.” Geotechnique 63 (4): 287–301. https://doi.org/10.1680/geot.SIP13.P.017.
Dhamole, P. B., R. R. Nair, S. F. D’souza, and S. S. Lele. 2007. “Denitrification of high strength nitrate waste.” Bioresour. Technol. 98 (2): 247–252. https://doi.org/10.1016/j.biortech.2006.01.019.
Erşan, Y. Ç., N. D. Belie, and N. Boon. 2015. “Microbially induced CaCO3 precipitation through denitrification: An optimization study in minimal nutrient environment.” Biochem. Eng. J. 101: 108–118. https://doi.org/10.1016/j.bej.2015.05.006.
Feng, K., and B. M. Montoya. 2016. “Influence of confinement and cementation level on the behavior of microbial-induced calcite precipitated sands under monotonic drained loading.” J. Geotech. Geoenviron. Eng. 142 (1): 04015057. https://doi.org/10.1061/(ASCE)GT.1943-5606.0001379.
Ferguson, S. J. 1994. “Denitrification and its control.” Antonie van Leeuwenhoek 66 (1–3): 89–110. https://doi.org/10.1007/BF00871634.
Fredlund, D. G., H. Rahardjo, and M. D. Fredlund. 2012. Unsaturated soil mechanics in engineering practice. New York, NY: Wiley.
Gerlach, R., and A. B. Cunningham. 2010. “Influence of biofilms on porous media hydrodynamics.” Chap. 5 in Porous media: Application in biological systems and biotechnology, edited by K. Vafai, 173–230. Boca Raton, FL: CRC Press.
Glass, C., and J. Silverstein. 1998. “Denitrification kinetics of high nitrate concentration water: pH effect on inhibition and nitrite accumulation.” Water Res. 32 (3): 831–839. https://doi.org/10.1016/S0043-1354(97)00260-1.
Guelon, T., J.-D. Mathias, and P. Stoodley. 2011. “Advances in biofilm mechanics.” Vol. 5 of Biofilm highlights, edited by H.-C. Flemming, J. Wingender, and U. Szewzyk, 111–139. Berlin, Germany: Springer.
Hammes, F., and W. Verstraete. 2002. “Key roles of pH and calcium metabolism in microbial carbonate precipitation.” Rev. Environ. Sci. Biotechnol. 1 (1): 3–7. https://doi.org/10.1023/A:1015135629155.
He, J., and J. Chu. 2014. “Undrained responses of microbially desaturated sand under monotonic loading.” J. Geotech. Geoenviron. Eng. 140 (5): 04014003. https://doi.org/10.1061/(ASCE)GT.1943-5606.0001082.
He, J., J. Chu, and V. Ivanov. 2013. “Mitigation of liquefaction of saturated sand using biogas.” Geotechnique 63 (4): 267–275. https://doi.org/10.1680/geot.SIP13.P.004.
Heijnen, J. J., and R. Kleerebezem. 2010. Bioenergetics of microbial growth: Encyclopedia of industrial biotechnology. New York, NY: Wiley.
Istok, J. D., M. M. Park, A. D. Peacock, M. Oostrom, and T. W. Wietsma. 2007. “An experimental investigation of nitrogen gas produced during denitrification.” Ground Water 45 (4): 461–467. https://doi.org/10.1111/j.1745-6584.2007.00319.x.
Ivanov, V., and J. Chu. 2008. “Applications of microorganisms to geotechnical engineering for bioclogging and biocementation of soil in situ.” Rev. Environ. Sci. Biotechnol. 7 (2): 139–153. https://doi.org/10.1007/s11157-007-9126-3.
James, G. A., B. K. Warwood, R. Hiebert, and A. B. Cunningham. 2000. “Microbial barriers to the spread of pollution.” Bioremediation, edited by J. J. Valdes, 1–13. Dordrecht, Netherlands: Springer.
Kavazanjian, E., S. T. O’Donnell, and N. Hamdan. 2015. “Biogeotechnical mitigation of earthquake-induced soil liquefaction by denitrification: A two-stage process.” In Proc., 6th Int. Conf. on Earthquake Geotechnical Engineering. Christchurch, New Zealand.
Kim, D.-S., and H. S. Fogler. 2000. “Biomass evolution in porous media and its effects on permeability under starvation conditions.” Biotechnol. Bioeng. 69 (1): 47–56. https://doi.org/10.1002/(SICI)1097-0290(20000705)69:1%3C47::AID-BIT6%3E3.0.CO;2-N.
Leroueil, S., D. W. Hight, and A. R. Cabral. 2015. “Practical implications of gas-water interactions in soils.” In Vol. 5. of Proc., Geotechnical synergy in Buenos Aires 2015, edited by A. O. Sfriso, D. Manzanal, and R. J. Rocca, 209–259. Alexandria, Egypt: IOS Press.
Lin, H., M. T. Suleiman, D. G. Brown, and E. Kavazanjian Jr. 2016. “Mechanical behavior of sands treated by microbially induced carbonate precipitation.” J. Geotech. Geoenviron. Eng. 142 (2): 04015066. https://doi.org/10.1061/(ASCE)GT.1943-5606.0001383.
Martin, D., K. Dodds, I. B. Butler, and B. T. Ngwenya. 2013. “Carbonate precipitation under pressure for bioengineering in the anaerobic subsurface via denitrification.” Environ. Sci. Technol. 47 (15): 8692–8699. https://doi.org/10.1021/es401270q.
Matějů, V., S. Čižinská, J. Krejčí, and T. Janoch. 1992. “Biological water denitrification: A review.” Enzyme Microb. Technol. 14 (3): 170–183. https://doi.org/10.1016/0141-0229(92)90062-S.
McConnaughey, T. A., and J. F. Whelan. 1997. “Calcification generates protons for nutrient and bicarbonate uptake.” Earth Sci. Rev. 42 (1): 95–117. https://doi.org/10.1016/S0012-8252(96)00036-0.
Mitchell, J. K., and J. C. Santamarina. 2005. “Biological considerations in geotechnical engineering.” J. Geotech. Geoenviron. Eng. 131 (10): 1222–1233. https://doi.org/10.1061/(ASCE)1090-0241(2005)131:10(1222).
Montoya, B. M., and J. T. Dejong. 2015. “Stress-strain behavior of sands cemented by microbially induced calcite precipitation.” J. Geotech. Geoenviron. Eng. 141 (6): 04015019. https://doi.org/10.1061/(ASCE)GT.1943-5606.0001302.
O’Donnell, S. T. 2016. “Mitigation of earthquake-induced soil liquefaction via microbial denitrification: A two-stage process.” Ph.D. dissertation, Arizona State Univ.
O’Donnell, S. T., E. Kavazanjian, and B. E. Rittmann. 2017a. “MIDP: Liquefaction mitigation via microbial denitrification as a two-stage process. II: MICP.” J. Geotech. Geoenviron. Eng. 143 (12): 04017095. https://doi.org/10.1061/(ASCE)GT.1943-5606.0001806.
O’Donnell, S. T., B. E. Rittmann, and E. Kavazanjian. 2017b. “MIDP: Liquefaction mitigation via microbial denitrification as a two-stage process. I: Desaturation.” J. Geotech. Geoenviron. Eng. 143 (12): 04017094. https://doi.org/10.1061/(ASCE)GT.1943-5606.0001818.
Overmann, J., U. Fischer, and N. Pfenning. 1992. “A new purple sulfur bacterium from saline littoral sediments Thiorhodovibrio winogradskyt gen.nov. and sp.nov.” Arch Microbiol. 157 (4): 320–335.
Pham, V. P., A. Nakano, W. R. L. Van der Star, T. J. Heimovaara, and L. A. Van Paassen. 2018. “Applying MICP by denitrification in soils: A process analysis.” Environ. Geotech. 5 (2): 79–93. https://doi.org/10.1680/jenge.15.00078.
Pinar, G., E. Duque, A. Haidour, J. Oliva, L. Sanchez-Barbero, V. Calvo, and J. L. Ramos. 1997. “Removal of high concentrations of nitrate from industrial wastewaters by bacteria.” Appl. Environ. Microbiol. 63 (5): 2071–2073.
Pirt, S. J. 1975. Principles of microbe and cell cultivation. Oxford, UK: Blackwell Scientific.
Rebata-Landa, V., and J. C. Santamarina. 2011. “Mechanical effects of biogenic nitrogen gas bubbles in soils.” J. Geotech. Geoenviron. Eng. 138 (2): 128–137. https://doi.org/10.1061/(ASCE)GT.1943-5606.0000571.
Sijbesma, W. F. H., J. S. Almeida, M. A. M. Reis, and H. Santos. 1996. “Uncoupling effect of nitrite during denitrification by Pseudomonas fluorescens: An in vivo 31P-NMR study.” Biotechnol. Bioeng. 52 (1): 176–182. https://doi.org/10.1002/(SICI)1097-0290(19961005)52:1%3C176::AID-BIT18%3E3.0.CO;2-M.
Skempton, A. W. 1954. “The pore-pressure coefficients A and B.” Géotechnique 4 (4): 143–147. https://doi.org/10.1680/geot.1954.4.4.143.
Thullner, M., J. Zeyer, and W. Kinzelbach. 2002. “Influence of microbial growth on hydraulic properties of pore networks.” Transp. Porous Media 49 (1): 99–122. https://doi.org/10.1023/A:1016030112089.
van der Star, W. R. L., E. Taher, M. P. Harkes, M. Blauw, M. C. M. van Loosdrecht, and L. A. van Paassen. 2009. “Use of waste stream and microbes for in situ transformation of sand into sandstone.” In Ground improvement technologies and case histories, edited by C. F. Leung, J. Chu, and R. F. Shen. Singapore: Research Publishing Services.
van Paassen, L. A., C. M. Daza, M. Staal, D. Y. Sorokin, W. van der Zon, and M. C. M. van Loosdrecht. 2010a. “Potential soil reinforcement by biological denitrification.” Ecol. Eng. 36 (2): 168–175. https://doi.org/10.1016/j.ecoleng.2009.03.026.
van Paassen, L. A., R. Ghose, T. J. M. van der Linden, W. R. L. van der Star, and M. C. M. van Loosdrecht. 2010b. “Quantifying biomediated ground improvement by ureolysis: Large-scale biogrout experiment.” J. Geotech. Geoenviron. Eng. 136 (12): 1721–1728. https://doi.org/10.1061/(ASCE)GT.1943-5606.0000382.
van Paassen, L. A., W. J. van Hermert, W. R. L. van der Star, G. van Zwieten, and L. van Baalen. 2012. “Direct shear strength of biologically cemented gravel.” In Proc., GeoCongress 2012: State of the Art and Practice in Geotechnical Engineering, 968–977. Reston, VA: ASCE.
van Spanning, R. J. M., D. J. Richardson, and S. J. Ferguson. 2007. “Introduction to the biochemistry and molecular biology of denitrification.” Chap. 1 in Biology of the nitrogen cycle, edited by H. Bothe, S. J. Ferguson, and W. E. Newton, 3–II. Amsterdam, Netherlands: Elsevier.
Wang, J. H., B. C. Baltzis, and G. A. Lewandowski. 1995. “Fundamental denitrification kinetic studies with Pseudomonas denitrificans.” Biotechnol. Bioeng. 47 (1): 26–41. https://doi.org/10.1002/bit.260470105.
Whiffin, V. S., L. A. van Paassen, and M. P. Harkes. 2007. “Microbial carbonate precipitation as a soil improvement technique.” Geomicrobiol. J. 24 (5): 417–423. https://doi.org/10.1080/01490450701436505.
Zumft, W. G. 1997. “Cell biology and molecular basis of denitrification.” Microbiol. Mol. Biol. Rev. 61 (4): 533–616.

Information & Authors

Information

Published In

Go to Journal of Geotechnical and Geoenvironmental Engineering
Journal of Geotechnical and Geoenvironmental Engineering
Volume 144Issue 8August 2018

History

Received: Apr 19, 2017
Accepted: Jan 22, 2018
Published online: May 30, 2018
Published in print: Aug 1, 2018
Discussion open until: Oct 30, 2018

Permissions

Request permissions for this article.

Authors

Affiliations

Researcher, Dept. of Geoscience and Engineering, Delft Univ. of Technology, Delft 2628 CN, Netherlands; Lecturer, Division of Geotechnology, Thuyloi Univ., 175 Tay Son, Dong Da, 10000, Hanoi, Vietnam (corresponding author). ORCID: https://orcid.org/0000-0002-4633-4490. Email: [email protected]
Leon A. van Paassen, Ph.D., Aff.M.ASCE
Associate Professor, School of Sustainable Engineering and the Built Environment, Arizona State Univ., Tempe, AZ 85281.
Wouter R. L. van der Star, Ph.D.
Researcher, Subsurface and Groundwater Systems, Deltares, Utrecht 3584 BK, Netherlands.
Timo J. Heimovaara, Ph.D.
Professor, Dept. of Geoscience and Engineering, Delft Univ. of Technology, Delft 2628 CN, Netherlands.

Metrics & Citations

Metrics

Citations

Download citation

If you have the appropriate software installed, you can download article citation data to the citation manager of your choice. Simply select your manager software from the list below and click Download.

Cited by

View Options

Get Access

Access content

Please select your options to get access

Log in/Register Log in via your institution (Shibboleth)
ASCE Members: Please log in to see member pricing

Purchase

Save for later Information on ASCE Library Cards
ASCE Library Cards let you download journal articles, proceedings papers, and available book chapters across the entire ASCE Library platform. ASCE Library Cards remain active for 24 months or until all downloads are used. Note: This content will be debited as one download at time of checkout.

Terms of Use: ASCE Library Cards are for individual, personal use only. Reselling, republishing, or forwarding the materials to libraries or reading rooms is prohibited.
ASCE Library Card (5 downloads)
$105.00
Add to cart
ASCE Library Card (20 downloads)
$280.00
Add to cart
Buy Single Article
$35.00
Add to cart

Get Access

Access content

Please select your options to get access

Log in/Register Log in via your institution (Shibboleth)
ASCE Members: Please log in to see member pricing

Purchase

Save for later Information on ASCE Library Cards
ASCE Library Cards let you download journal articles, proceedings papers, and available book chapters across the entire ASCE Library platform. ASCE Library Cards remain active for 24 months or until all downloads are used. Note: This content will be debited as one download at time of checkout.

Terms of Use: ASCE Library Cards are for individual, personal use only. Reselling, republishing, or forwarding the materials to libraries or reading rooms is prohibited.
ASCE Library Card (5 downloads)
$105.00
Add to cart
ASCE Library Card (20 downloads)
$280.00
Add to cart
Buy Single Article
$35.00
Add to cart

Media

Figures

Other

Tables

Share

Share

Copy the content Link

Share with email

Email a colleague

Share