Biological Considerations in Geotechnical Engineering
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VIEW THE REPLYPublication: Journal of Geotechnical and Geoenvironmental Engineering
Volume 131, Issue 10
Abstract
The understanding of soil behavior during the last 300 years has centered on mechanical principles, geological processes, and later on, mineralogy and the relevance of colloidal chemistry. More recently, research in biology and earth science has enabled important advances in understanding the crucial involvement of microorganisms in the evolution of the earth, their ubiquitous presence in near surface soils and rocks, and their participation in mediating and facilitating most geochemical reactions. Yet, the effect of biological activity on soil mechanical behavior remains largely underexplored in the geotechnical field. The purposes of this paper are to introduce microbiological concepts, identify and illustrate their potential roles in soils and rocks, and stimulate interest in seeking improved understanding of their importance and potential for advancing the states of knowledge and practice in geotechnical engineering. It is shown that microorganisms play an important part on the formation of many fine grained soils, can alter the behavior of coarse grained soils (including hydraulic conductivity, diffusion and strength), accelerate geochemical reactions by orders of magnitude, promote both weathering and aging, and alter the chemical and mechanical properties of specimens after sampling. While extensive research is needed to delineate the full impact of biomass and biomediated reactions on soil behavior, it is anticipated that a proper understanding of biological principles will lead to improved soil characterization, enhanced understanding of soil behavior, and even alternative geotechnical engineering solutions.
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Acknowledgments
The writers thank J. M. Duncan, F. Francisca, H. Mills G. Narsilio, V. Rebata, C. Ruppel, and the anonymous reviewers for their helpful comments.
References
Alexander, M., (1961). Introduction to soil microbiology, Wiley, New York.
Banyard, J. K., Coxon, R. E., and Johnston, T. A. (1992). “Carsington Reservoir—Reconstruction of the dam.” Civil Engineering, Institution of Civil Engineers, Proceedings, 92, 106–115.
Bartlett, R. W. (1998). Solution mining—Leaching and fluid recovery of materials, 2nd Ed., Taylor and Francis, London.
Barton, H. A., Spear, J. R., and Pace, N. R. (2001). “Microbial life in the underworld: Biogenicity in secondary mineral formations.” Geomicrobiol. J., 18, 359–368.
Baveye, P. Vandevivere, P., Hoyle, B. L., DeLeo, P. C., and Sanchez de Lozada, D. (1998). “Environmental impact and mechanisms of the biological clogging of saturated soils and aquifer materials.” Critical Reviews in Environmental Science and Technology, 28(2), 123–191.
Bennett, R. H., Bryant, W. R., and Hulbert, M. H. (1991). Microstructure of fine-grained sediments, Springer, New York.
Bonala, M. V. S., and Reddi, L. N. (1998), “Physicochemical and biological mechanisms of soil clogging: An overview.” Filtration and drainage in geotechnical/ geoenvironmental engineering, ASCE, GSP 78, Reston, Va., pp. 43–68.
Borowski, W. S., Hoehler, T. M., Alperin, M. J., Rodriguez, N. M., and Paull, C. K. (2000). “Significance of anaerobic methane oxidation in methane-rich sediments overlying the blake ridge gas hydrates.” Proc., Ocean Drilling Program, Scientific Results, C. K. Paull, R. Matsumoto, P. J. Wallace, and W. P. Dillon, eds., 164, 87–99.
Camp, W. M., Mayne, P. W., and Brown, D. A. (2002). “Drilled shaft axial design values: predicted versus measured response in a calcareous clay.” Proc., ASCE 2002 Deep Foundation Congress, Reston, Va. 1518–1532.
Cavagna, S., Clari, P., and Martire, L. (1999). “The role of bacteria in the formation of cold seep carbonates: Geological evidence from Monferrato (Tertiary, NW Italy).” Sedimentary Geology, 126, 253–270.
Chapelle, F. H. (2001). Ground-water microbiology and geochemistry, 2nd Ed., Wiley, New York.
Colwell, F. S. (1989). “Microbiological comparison of surface soil and unsaturated subsurface soil from a semiarid high desert.” Appl. Environ. Microbiol., 55, 2420–2423.
Cripps, J. C., Hawkins, A. B., and Reld, J. M. (1993). “Engineering problems with pyritic mudrocks.” Geoscientist, Geological Society, London, 3, 16–19.
Day, R. W. (1995). “Engineering properties of diatomaceous fill.” J. Geotech. Eng., 121(12), 908–910.
Dennis, M. L., and Turner, J. P. (1998). “Hydraulic conductivity of compacted soil treated with biofilm.” J. Geotech. Geoenviron. Eng., 124(2), 120–127.
Deshpande, P. A., and Shonnard, D. R. (1999). “Modeling the effects of systematic variation in ionic strength on the attachment kinetics of Pseudomonas fluorescens UPER-1 in saturated sand columns.” Water Resour. Res., 35(5), 1619–1627.
Diaz-Rodriguez, J. A., Lozano-Santa Cruz, R., Dávila-Alcocer, V. M., Vallejo, E., and Girón, P. (1998). “Physical, chemical, and mineralogical properties of Mexico City sediments: a geotechnical perspective.” Can. Geotech. J., 35, 600–610.
Dickens, G. R. (2001). “Modeling the global carbon cycle with a gas hydrate capacitor: significance for the latest Paleocene thermal maximum.” Proc., Ocean Drilling Program, Scientific Results, C. K. Paull, R. Matsumoto, P. J. Wallace, and W. P. Dillon, eds., Monograph 124, AGU, 19–38, American Geophysical Union.
Doran, P. T., Fritsen, C. H., McKay, C. P., Priscu, J. C., and Adams, E. E. (2003). “Formation and character of and ancient 19-m ice cover and underlying trapped brine in an “ice-sealed” east Antarctic lake.” Proc. Natl. Acad. Sci. U.S.A., 100(1), 26–31.
Ehrlich, H. L. (1996a). Geomicrobiology, 3rd Ed., Marcel Dekker, New York.
Ehrlich, H. L. (1998a). “Geomicrobiology.” Geotimes, 43, 43–44.
Ehrlich, H. L. (1998b), “Geomicrobilogy: Its significance for geology.” Earth-Sci. Rev., 45, 45–60.
Ehrlich, H. L. (1996b). “How microbes influence mineral growth and dissolution.” Chem. Geol., 132, 5–9.
Ehrlich, H. L. (1999). “Microbes as geologic agents: Their role in mineral formation.” Geomicrobiol. J., 16, 135–153.
Elvert, M., Greinert, J., and Suess, E. (2001). Carbon isotopes of biomarkers derived from methane-oxidizing microbes at hydrate ridge, cascadia convergent margin, in natural gas hydrates: occurrence, distribution and detection, C. K. Paull and W. P. Dillon, eds., AGU Geophysical Monograph 124, AGU, 115–129, Washington, D.C.
Fan, D., Ye, J., Yin, L., and Zhang, R. (1999). “Microbial processes in the formation of the Sinian Gaoyan manganese carbonate ore, Sichuan Province-China.” Ore Geology Reviews, 15, 79–93.
Fierer, N., Schimel, J. P., and Holden, P. A. (2003). “Variation in microbial community composition through two soil depth profiles.” Soil Biol. Biochem., 35, 167–176.
Folk, R. L., and Lynch, F. L. (1997). “The possible role of nannobacteria (dwarf bacteria) in clay mineral diagenesis and the importance of careful sample preparation in high magnification SEM study.” J. Sediment Res., 67, 597–603.
Freeze, R. A., and Cherry, J. A. (1979). Groundwater, Prentice–Hall, Englewood Cliffs, N.J.
Greinert, J., Bohrmann, G., and Suess, E. (2001). Gas hydrate-associated carbonates and methane-venting at hydrate ridge: Classification, distribution and origin of authigenic lithologies, in natural gas hydrates: Occurrence, distribution and detection, C. K. Paull and W. P. Dillon, eds., AGU Geophysical Monograph 124, AGU, 99–113, Washington, D.C.
Harder, J. (1997). “Anaerobic methane oxidation by bacteria employing 14C-methane uncontaminated with 14C-carbon monoxide.” Mar. Geol., 137, 13–23.
Hattori, T. (1973). Microbial life in the soil, Dekker, New York.
Hill, D. D., and Sleep, B. E. (2002). “Effects of biofilm growth on flow and transport through a glass parallel plate fracture.” J. Contam. Hydrol., 56, 227–246.
Horn, J. M., and Meike, A. (1995). “Microbial activity at Yucca Mountain.” Rep. No. UCRL-ID-122256, Lawrence Livermore National Laboratory, Livermore, Calif.
Johnson, R. C., and Flores, R. M. (1998). “Developmental geology of coalbed methane from shallow to deep in Rocky Mountain basins and in Cook Inlet—Matanuska basin, Alaska, U.S.A. and Canada.” Int. J. Coal Geol., 35, 241–282.
Kastner, M. (2001). Gas hydrates in convergent margins: Formation, occurrence, geochemistry and global significance, in natural gas hydrates: Occurrence, distribution and detection, C. K. Paull and W. P. Dillon, eds., AGU Geophysical Monograph 124, AGU, 67–86, Washington, D.C.
Konhauser, K. O., and Urrutia, M. M. (1999). “Bacterial clay authigenesis: A common biogeochemical process.” Chem. Geol., 161, 399–413.
Lessard, G. (1981). “Biogeochemical phenomena in quick clays and their effects on engineering properties.” PhD dissertation, Dept. of Civil Engineering, Univ. of California, at Berkeley, Berkeley, Calif.
Lessard, G., and Mitchell, J. K. (1985). “The causes and effects of aging in quick clays.” Can. Geotech. J., 22, 335–346.
Madigan, M. T., Martinko, J. M., and Parker, J. (2000). Brock—Biology of Microorganisms, 9th Ed., Prentice–Hall, Upper Saddle River, N.J.
Martin, G. R., Yen, T. F., and Karimi, S. (1996). “Application of biopolymer technology in silty soil matrices to form impervious barriers.” Proc., 7th Australia-New Zealand Geomechanics Conference, Adelaide, Australia.
Martínez, G. A., Maya, L. F., Rueda, D. A., and Sierra, G. D. (2003). “Aplicaciones estructurales de bacterias en la construcción de nuevas obras de infraestructura.” Thesis submitted in partial fulfillment for the degree of Ingeniero Civil, Estabilización de Suelos, Universidad Nacional de Colombia, Medellín.
Mitchell, J. K. (1993). Fundamentals of soil behavior, Wiley, New York.
Mitchell, J. K. (1986). “Practical problems from surprising soil behavior.” J. Geotech. Eng., 112(3), 259–289.
Moya, J., and Rodriguez, J. (1987). “El subsuelo de Bogota y los problemas de cimentaciones.” Proc., 8th Panamerican Conf. on Soil Mechanics and Foundation Engineering, Univ. Nacional de Colombia, 197–264, Cartagena, Columbia.
Mueller, R. F. (1996). “Bacterial transport and colonization in low nutrient environments.” Water Resour. Res., 30(11), 2681–2690.
Nealson, K. H. (1997). “The limits of life on Earth and searching for life on Mars.” J. Geophys. Res., 102, 23675–23686.
Nordstrom, D. K., and Alpers, C. N. (1999). “Geochemistry of acid mine waters.” The environmental geochemistry of mineral deposits, G. S. Plumlee and M. J. Logsdon, eds., Review of Economic Geology, Vol. 6A, Society of Economic Geology. Inc., Littleton, Colo. Chap. 6, 133–160.
Ohtsubo, M., Egashira, K., and Kashima, K. (1995). “Depositional and post-depositional geochemistry, and its correlation with the geotechnical properties of marine clays in Ariake Bay, Japan.” Geotechnique, 45, 509–523.
Olguin, E. J., Sanchez, G., and Hernandez, E. (2000). Environmental biotechnology and cleaner bioprocesses, Taylor and Francis, Philadelphia.
Oyama, T., Chigira, M., Ohmura, N., and Watanabe, Y. (1998). “Heave of house foundation by the chemical weathering of mudstone.” Oyo Chisitsu, J. Japanese Soc. Eng. Geol., 39, 261–272.
Paul, E. A., and Clark, F. E. (1996). Soil microbiology and biochemistry, Academic, New York.
Paul, M. A., Peacock, J. D., and Wood, B. F. (1992). “The engineering geology of the Carse clay at the National Soft Clay Research Site, Bothkennar.” Geotechnique, 42, 183–198.
Penner, E., Eden, W. J., and Gillott, J. E. (1973). “Floor heave due to biochemical weathering of shale.” Proc., 8th Int. Conf. on Soil Mechanics and Foundation Engineering, Moscow, 2, 151–152.
Penner, E., Gillott, J. E., and Eden, W. J. (1970). “Investigation of heave in billings shale by mineralogical and biochemical methods.” Can. Geotech. J., 7, 333–338.
Purves, W. K., Orians, G. H., Heller, H. C., and Sadava, D. (1997). Life—The science of biology, 5th Ed., Sinauer Associates, Sunderland, Mass.
Rowe, P. W. (1991). “Reassessment of the causes of the Carsington embankment failure.” Geotechnique, 41, 395–421.
Seki, K., Miyazaki, T., and Nakano, M. (1998). “Effects of microorganisms on hydraulic conductivity decrease in infiltration.” Eur. J. Soil. Sci., 49, 231–236.
Skempton, A. W. (1988). “Geotechnical aspects of the Carsington dam failure.” Proc., 11th Int. Conf. on Soil Mechanics and Foundation Engineering, 5, 2581–2591, San Francisco.
Skempton, A. W., and Vaughan, P. R. (1993). “Failure of Carsington Dam.” Geotechnique, 43, 151–173.
Tanaka, H., Locat, J., Shibuya, S., Thiam Soon, T., and Shiwakoti, D. R. (2001). “Characterization of Singapore, Bangkok, and Ariake clays.” Can. Geotech. J., 38, 378–400.
Urrutia, M. M., and Beveridge, T. J. (1995). “Formation of short-range ordered alumino-silicates in the presence of a bacterial surface and organic ligands.” Geoderma, 65, 149–165.
Vandevivere, P., and Baveye, P. (1992). “Relationship between transport of bacteria and their clogging efficiency in sand columns.” Appl. Environ. Microbiol., 58(8), 2523–2530.
Woese, C. R., Kandler, O., and Wheelis, M. L. (1990). “Towards a natural system of organisms—Proposal for the domains Archea, Bacteria and Eucarya.” Proc. Natl. Acad. Sci. U.S.A., 87, 4576–4579.
Yamanaka, T., Miyasaka, H., Aso, I., Tanigawa, M., and Shoji, K. (2002). “Involvement of sulfur- and iron-transforming bacteria in heaving of house foundations.” Geomicrobiol. J., 19. 519–528.
Yohta, H. (1999). “Biochemical weathering of the Neogene mudstone and damages to foundations.” Dobuku Kogaku Ronbunshu (Bulletin of Civil Engineers), 617, 213–224.
Yohta, H. (2000). “A study on heaving due to biochemical weathering of the Neogene sedimentary soft rock.” Dissertation, College of Science and Technology, Nihon Univ. Chiyoda-ku, Tokyo, Japan.
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© 2005 ASCE.
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Received: May 20, 2003
Accepted: Aug 26, 2004
Published online: Oct 1, 2005
Published in print: Oct 2005
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